PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01730.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 406aa    MW: 45666.3 Da    PI: 10.3493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01730.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.68.9e-30186236151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  OMERI03G01730.2 186 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 236
                      79***********************************************86 PP

2K-box69.41.2e-23255348699
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      g+++ +++ e+ + +++ L k++e L++ +R+llGe+L+++s++eL++Le +Le+sl +iR +K++ll eq+ +l++ke +l+++n++Lr k +
  OMERI03G01730.2 255 GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELRDKCK 348
                      4557788899********************************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-41178237IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.735178238IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30180200IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-32180260IPR002100Transcription factor, MADS-box
CDDcd002653.06E-42180251No hitNo description
PROSITE patternPS003500180234IPR002100Transcription factor, MADS-box
PfamPF003195.4E-27187234IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30200215IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30215236IPR002100Transcription factor, MADS-box
PfamPF014868.1E-24260347IPR002487Transcription factor, K-box
PROSITE profilePS5129713.315263353IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGGSGTNFFP GWEISASLSL FVLPGCITTS APGCGGHDDD KKRKRNRTHS SCCRCLCPPL  60
PRWGGHYANK GKRQHPQGPK RKAEEEEVER RERGKKRERA SEQLGLRPNP TAPPPPLLAI  120
FGESPFADSQ IPFRFTTFAL SAAPPIGIKK KRAASLAPPP PPRRPQPFLW LVHRRSKMVR  180
GKTQMKRIEN PTSRQVTFSK RRNGLLKKAF ELSVLCDAEV ALIVFSPRGK LYEFASASTQ  240
KTIERYRTYT KENIGNKTVQ QDIEQVKADA DGLAKKLEAL ETYKRKLLGE KLDECSIEEL  300
HSLEVKLERS LISIRGRKTK LLEEQVAKLR EKEMKLRKDN EELRDKCKNQ PPLSAPLTVR  360
AEDENPDRNI NTTNDNMDVE TELFIGLPGR SRSSGAAEDS PAMPHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-18180249271Myocyte-specific enhancer factor 2A
3mu6_B1e-18180249271Myocyte-specific enhancer factor 2A
3mu6_C1e-18180249271Myocyte-specific enhancer factor 2A
3mu6_D1e-18180249271Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRERGKKRE
29399GKKRERA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8300370.0CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630979.11e-160PREDICTED: MADS-box transcription factor 50
SwissprotQ9XJ601e-162MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0E0CUE00.0A0A0E0CUE0_9ORYZ; Uncharacterized protein
STRINGORGLA03G0015400.11e-156(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-68AGAMOUS-like 20